<div> <i class="fas fa-dna" role="presentation" aria-label="dna icon"></i> Nissle co-cultured with S multans Expression Explorer (Nimee) </div>

Pathways heatmap
(click in text box to select pathways):

Select/Order Samples:

Heatmap Scaling:

Scaled (Z-score)

Unscaled (Log2)

Min Abs Log2(FC) Filter (for Heatmap)

Select FC Comparison Type:

Select Control Group(s):

Select Treatment Group(s):

Enter Gene Pattern for Bar Plot (e.g., 'CASP', '^CASP1__'):

Select groups for Log2(FC) ratio:

Select Control Group(s):

Select Treatment Group(s):

Show Top N Genes by Log2(FC):

Choose Pathway to View Details:

Enter Gene Pattern (e.g., 'CASP','^CASP1'):

Enter Gene Pattern ('HBA','^>HBA' to Find Sequences:

Fasta file: data_seq/nissle_genes.fa.gz

Uses: zgrep -A1 pattern file | grep -v '^--$'